Biology & Life Sciences
What if you could detect species without observing them? What if nature sends out a reliable signal disclosing the presence of species that we can capture and interpret with great accuracy? How can we improve our efforts to monitor and conserve species habitats and ecosystems with such information in our hands?
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Course Details

Language English
Duration 7 weeks
Effort 1-2 hrs/week
Description

Our comprehensive course offers a unique opportunity to delve into the world of eDNA and its groundbreaking role in understanding and safeguarding our natural ecosystems. Guided by our team of ecologists in the field, you'll learn about hands-on skills in sampling techniques, laboratory methodologies, and data interpretation. You will investigate ecological questions hidden within rivers, oceans, forests, and soils as you learn about analysing DNA samples present in the environment. Through the eDNA analysis approach, you'll gain the power to identify elusive species without disturbing their habitats. Imagine being able to monitor the presence of endangered creatures, invasive species, and even those on the brink of discovery, all while contributing to critical conservation efforts.

Follow our researchers as they take you along on their fieldwork in the tropical rainforests of Colombia, the coastal waters of Brittany, France and the forest reserves of Switzerland. Their research case studies will offer you the opportunity to dive into real-life environmental issues where scientific questions are intertwined with societal challenges. Through the different stages of their eDNA research, we can generate new insights about the diversity of species and the health of ecosystems for these cases.

Whether you're a conservationist, ecologist, an environmental policy expert, citizen scientist, or simply a nature enthusiast, this course promises to ignite your curiosity and equip you with tools to address today's pressing ecological challenges.

What you will learn

- Theoretical and conceptual understanding of environmental DNA
- The role and potential of eDNA in biodiversity research
- Designing an eDNA sampling strategy
- How to perform eDNA sampling methods and procedures in the natural environment
- The scientific rationale and course of action taken in the lab environment, focusing predominantly on metabarcoding
- Considerations to maximise and effectively target DNA regions
- Matching samples and sequences to species databases
- Understanding insights about species and diversity characteristics in ecosystems
- Applying insights from each stage of the eDNA workflow to real-life research case studies
- Evaluating the interests and perspectives of different stakeholders in a socio-ecological problem
- Connecting eDNA-based biodiversity assessment to evidence-based environmental decision-making

Prerequisites

Basic knowledge of biological and ecological concepts

Plan

Module 1: Introduction to eDNA

This module introduces you to the field of environmental DNA analysis, how we come to understand what eDNA is, and how we can use it in biodiversity research.

Module 2: Designing the eDNA Workflow

This module takes you through the different steps and aspects of an eDNA research project.

Module 3: Sampling eDNA in the Environment

This module discusses the characteristics of designing a eDNA sampling strategy and implementing it in different types of environment.

Module 4: Laboratory Analysis

This module focuses on how eDNA samples are processed in the lab to obtain targeted genetic information.

Module 5: Bioinformatics Analysis

This module goes into how we can organise and analyse our data from eDNA samples using bioinformatic tools.

Module 6: Ecological Interpretation

This module teaches you how to interpret eDNA signals and make an ecological biodiversity assessment.

Module 7: Environmental Decision-Making

This module will show you how we can use eDNA to inform sound and sustainable environmental decision-making.

Course instructors

Loïc Pellissier

Loïc Pellissier has been Assistant Professor (with Tenure Track) of Landscape Ecology at the Institute of Terrestrial Ecosystems at ETH Zurich and at WSL since July 2015. Loïc Pellissier studied at the University of Lausanne and completed his PhD in 2012.…

Kristy Deiner

I am fascinated and humbled by biodiversity. I want to understand how it is generated and how to maintain it. Biodiversity spans genes to ecosystems and this requires interdisciplinary research that utilizes universal tools. For this reason I have focused…

Aline Frossard

Aline Frossard has been researcher at the Swiss Federal Research Institute for Forest, Snow and Landscape (WSL) since 2018 and a lecturer at ETH Zurich since 2020. She obtained her PhD degree from the ETH Zürich in microbiology / ecology. She then worked …

Fabian Fopp

Fabian is a Teaching Coordinator in the Ecosystems and Landscape Evolution research group at ETH Zurich. He is interested in investigating biodiversity patterns in aquatic and terrestrial ecosystems in Switzerland. To identify underlying environmental fac…

Kevin Keyaert

Kevin Keyaert is the Course Coordinator in the Ecosystems and Landscape Evolution research group at ETH Zurich, where he is responsible for the development of a MOOC on environmental DNA. Kevin specializes in the science communication and governance of so…

Monika Goralczyk

Monika’s research focuses on the use of environmental DNA in monitoring the effects of habitat loss and restoration on vertebrate communities. In particular, she is interested in applying eDNA metabarcoding to study patterns of catchment-​scale vertebrate…

Romane Rozanski

Romane Rozanski has been a PhD student in the Ecosystems and Landscape ecology (ELE) group from the Department of Environmental Sciences at ETH Zurich since May 2022. Her research focuses on the application of environmental DNA (eDNA) in marine ecosystems…

Marion Muff

Marion is a Teaching Assistant in the Ecosystems and Landscape Evolution research group at ETH Zurich. She is currently completing her Master's degree in Environmental Sciences at ETH Zurich with a major in Ecology and Evolution. During her studies, she s…

Camille Albouy

Camille works at the interface of the research fields of biogeography, macroecology and evolution to understand the origin of marine biodiversity, its current distribution and its possible future under climate change and anthropogenic pressures. Camille i…

ETH Zurich

Freedom and individual responsibility, entrepreneurial spirit and open-mindedness: ETH Zurich stands on a bedrock of true Swiss values. Our university for science and technology dates back to the year 1855, when the founders of modern-day Switzerland crea…

65 instructors